PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G020100.2
Common NameB456_011G020100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 311aa    MW: 34147.3 Da    PI: 7.208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G020100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-062442811254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gorai.011G020100.2 244 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 281
                         677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.087232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-9242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12242295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.47E-6242285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAEEFQAAIC GGGGGTWWNI PTKTMFSGCN SPLYSTTIAD MGSFGWGNDM VATDDIIIKP  60
RSCYNSDNSG TNNNSSILID STLGFGLSSS DNWNQSLLRS NNQEFPMDST YECPPTLLFD  120
TDPQQQSVFN NNNQSINYMS CSSLSSSPSW PKLAPPLTTK QQQQPPVGTG TLQFSNNTSF  180
WNASATGNIL PSLYEEKPNC PTLTTKTNIE EVRKNSNSKK ASNETPLKRP RLETPSPLPT  240
FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVNVLST PYMKQAAASI  300
QQVIKKTKIF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3947691e-125GQ394769.1 Gossypium hirsutum cultivar Deltapine 90 clone MONCS1792 SSR marker DC40367 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457544.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A0D2UL050.0A0A0D2UL05_G
STRINGVIT_00s0274g00070.t011e-63(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.23e-41bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]